PhD Position Project NWO OC XL Metabolism

1 week geleden


Amsterdam, Noord-Holland, Nederland Vrije Universiteit Amsterdam Voltijd

Understanding the robustness of next generation microbial cell factories.

Your function

Microbial cell factories are engineered microorganisms that sustainably produce valuable compounds, from biofuels to fine chemicals. Product pathways in these factories are designed to yield desired compounds, with electron flow control being a critical engineering challenge, particularly for optimizing yield. Redox cofactors like NAD+/NADH play a key role in electron transfer, but their involvement in numerous reactions can lead to unintended effects when adjusting product pathways. Our project focuses on minimizing these effects by separating the pathways and metabolic networks, assigning NAD+/NADH for assimilation and a non-canonical redox cofactor for product formation.

In this NWO-XL project 7 PhD students and 2 postdocs from the VU, Wageningen and TU Delft work together to produce such novel cell factories. The role of this PhD position at the VU is to understand the fitness impact of the redox cofactor engineering, and to test robustness of engineered strains. We combine mathematical models (in collaboration with another VU PhD student) with laboratory evolution and physiological characterisation of strains in E. coli and S. cerevisiae.

Your profile

A Master in a relevant field, such as microbiology, biotechnology, (bio)physics, or systems biology, or equivalent.

Skills/Qualifications

  • Experience in, or affinity with, microbial laboratory evolution and cell physiology
  • Experience in, or affinity with, the use of computational methods in biological contexts
  • Problem solving
  • Independent but willing to ask for help
  • Curious
  • Communicative in word and text

As a university, we strive for equal opportunities for all, recognising that diversity takes many forms. We believe that diversity in all its complexity is invaluable for the quality of our teaching, research and service. We are always looking for talent with diverse backgrounds and experiences. This also means that we are committed to creating an inclusive community so that we can use diversity as an asset.

We realise that each individual brings a unique set of skills, expertise and mindset. Therefore we are happy to invite anyone who recognises themselves in the profile to apply, even if you do not meet all the requirements.

What do we offer?

A challenging position in a socially engaged organisation. At VU Amsterdam, you contribute to education, research and service for a better world. And that is valuable. So in return for your efforts, we offer you:

  • a salary of € 2.770,00 (PhD) and maximum € 3.539,00 (PhD) gross per month in the fourth year, for a full-time employment
  • your employment contract will initially last 1 year and prolonged to 4 years upon a positive evaluation.

We also offer you attractive fringe benefits and arrangements. Some examples:

  • A full-time 38-hour working week comes with a holiday leave entitlement of 232 hours per year. If you choose to work 40 hours, you have 96 extra holiday leave hours on an annual basis. For part-timers, this is calculated pro rata.
  • 8% holiday allowance and 8.3% end-of-year bonus
  • a wide range of sports facilities which staff may use at a modest charge
  • discount on (and occasionally exclusive access to) theater performances and courses at the Griffioen Cultural Center
  • contribution to commuting expenses
About us

Faculty of Science
Researchers and students at VU Amsterdam's Faculty of Science tackle fundamental and complex scientific problems to help pave the way for a sustainable and healthy future. From forest fires to big data, from obesity to malnutrition, and from molecules to the moon: we cover the full spectrum of the natural sciences. Our teaching and research have a strong experimentally technical, computational and interdisciplinary nature. Your project will take part in the Systems Biology Lab ), part of AIMMS, the molecule research accelerator ). We offer a multidisciplinary research environment with room for personal development.

We work on new solutions guided by value-driven, interdisciplinary methodologies. We are committed to research, valorisation and training socially engaged citizens of the world who will make valuable contributions to a sustainable, healthy future.

Are you interested in joining the Faculty of Science? You will join undergraduate students, PhD candidates and researchers at the biggest sciences faculty in the Netherlands. You will combine a professional focus with a broad view of the world. We are proud of our collegial working climate, characterised by committed staff, a pragmatic attitude and engagement in the larger whole. The faculty is home to over 11,000 students enrolled in 40 study programmes. It employs over 1,600 professionals spread across 10 academic departments.

Vrije Universiteit Amsterdam
Vrije Universiteit Amsterdam stands for values-driven education and research. We are open-minded experts with the ability to think freely. - a broader mind. Maintaining an entrepreneurial perspective and concentrating on diversity, significance and humanity, we work on sustainable solutions with social impact. By joining forces, across the boundaries of disciplines, we work towards a better world for people and planet. Together we create a safe and respectful working and study climate, and an inspiring environment for education and research. Learn more about our codes of conduct

We are located on one physical campus, in the heart of Amsterdam's Zuidas business district, with excellent location and accessibility. Over 5,500 staff work at the VU and over 30,000 students attend academic education.

Diversity
Diversity is the driving force of the VU. The VU wants to be accessible and receptive to diversity in disciplines, cultures, ideas, nationalities, beliefs, preferences and worldviews. We believe that trust, respect, interest and differences lead to new insights and innovation, to sharpness and clarity, to excellence and a broader understanding.

We stand for an inclusive community and believe that diversity and internationalisation contribute to the quality of education, research and our services.

Therefore, we are always searching for people whose backgrounds and experience contribute to the diversity of the VU community.

Interested

Are you interested in this position and do you believe that your experience will contribute to the further development of our university? In that case, we encourage you to submit your application.

Submitting a diploma is part of the application process.

Applications received by e-mail will not be considered.

Acquisition in response to this advertisement is not appreciated.



  • Amsterdam, Noord-Holland, Nederland VU Amsterdam Voltijd

    Your functionMicrobial cell factories are engineered microorganisms that sustainably produce valuable compounds, from biofuels to fine chemicals. Product pathways in these factories are designed to yield desired compounds, with electron flow control being a critical engineering challenge, particularly for optimizing yield. Redox cofactors like NAD+/NADH play...

  • Phd Position

    1 week geleden


    Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    PhD Position - Artificial Intelligence: Power Asymmetries and Data JusticeFaculteit/Dienst:Faculteit der GeesteswetenschappenOpleidingsniveau:MasterFunctie type:Wetenschappelijk PersoneelSluitingsdatum:8 september 2024Vacaturenummer:13035- Are you looking for a challenging position in a dynamic setting? The Amsterdam School for Cultural Analysis (ASCA)...

  • PhD: Fano4nano

    1 week geleden


    Amsterdam, Noord-Holland, Nederland AMOLF Voltijd

    Two PhD positions: Fano4nano - Fano resonance enhanced scatterometry for wafer metrologyWork ActivitiesAre you looking for a challenging project in which you develop fundamental advances in metaphotonics and work with high-tech industry to apply them? In this project we aim to develop nanophotonic structures for application in high-precision semiconductor...


  • Amsterdam, Noord-Holland, Nederland AMOLF Voltijd

    PhD-position: Quantum nano-optomechanicsWork ActivitiesThe Photonic Forces group at AMOLF is looking for PhD students to join our team working on the intriguing physics of nano-optomechanical systems. We are fascinated by the ability of light to measure and control mechanical motion in new and powerful ways. We seek to challenge the limits of mechanical...


  • Amsterdam, Noord-Holland, Nederland CWI Voltijd

    Centrum Wiskunde & Informatica (CWI) in Amsterdam has vacancies for:Two PhD positions in AI-based methods for integrated hydrogen-electricity systems (M/F/x)BackgroundJob description:[1] The first position is part of WP2 of GVNL, that covers the transport and storage of hydrogen. The PhD position at CWI will concern the interface between hydrogen and...


  • Amsterdam, Noord-Holland, Nederland AMOLF Voltijd

    Two PhD positions: Metasurfaces for energy-efficient wave-based computingWork ActivitiesAre you fascinated by the idea of using light for all-optical information processing? Can you envision optical metasurfaces that perform operations on data at the speed of light? Are you motivated to contribute to new technologies that realize radical improvements in the...


  • Amsterdam, Noord-Holland, Nederland ARCNL Voltijd

    Work ActivitiesMaterials are ubiquitous parts of our everyday life and as technologies keep pushing boundaries, the search for new functional materials is getting more and more complex. In this PhD project, you will investigate and design 2D materials with applications in energy storage, semiconductors, and nanolithography. Until now, most research studies...


  • Amsterdam, Noord-Holland, Nederland ARCNL Voltijd

    PhD- student: Resolving Surface Reactions in Plasma Catalysis (SURPLAS)Work ActivitiesSurface reactions on metal model catalysts in plasma environmentActivation of molecules in a plasma can form the basis for efficient chemical reactions making direct use of electrical energy. The interaction of plasma-activated species with a catalyst enhances the...

  • PhD Position

    1 week geleden


    Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    Job Title: PhD Researcher in Artificial Intelligence: Power Asymmetries and Data JusticeCompany: University of AmsterdamWhat You'll DoDevelop a PhD proposal in dialogue with the ongoing researchSubmit a PhD thesis within the appointment periodParticipate in project research group meetingsPublish research outputs including academic articlesPresent research...


  • Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    PhD Position in Evolutionary BiologyFaculteit/Dienst:Faculteit der Natuurw, Wiskunde & InformaticaOpleidingsniveau:MasterFunctie type:PromotieplaatsSluitingsdatum:26 mei 2024Vacaturenummer:12900- Are you interested in how species persist and evolve in changing environments? Are you excited about studying evolution in action? Are you enthusiastic about...

  • PhD/ Postdoc in cellular

    1 week geleden


    Amsterdam, Noord-Holland, Nederland Netherlands Institute for Neuroscience Voltijd

    Location: Amsterdam Max hours per week: 38 Min/Max salary: PhD-student € 2.770 – 3.539, Postdoc € 3.226 – 5.090 Duration of agreement: PhD-student 4 years, Postdoc max 3,5 years (for both positions: first for 1 year, the contract will be extended in case of proper functioning) Apply until: September 1, 2024 (this vacancy is now also open for...


  • Amsterdam, Noord-Holland, Nederland ARCNL Voltijd

    Work ActivitiesThe goal of the project is to learn more about the possible detrimental effects of electrons in scanning electron microscopy for metrology applications, on materials used in the semiconductor industry. As a PhD student you will use state of the art tools to unravel and quantify the physical and chemical changes at surfaces and within layers...


  • Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    PhD Position in Literary Studies: Re-Imagining Water in the Neerlandophone SpaceFaculteit/Dienst:Faculteit der GeesteswetenschappenOpleidingsniveau:MasterFunctie type:PromotieplaatsSluitingsdatum:1 June 2024Vacaturenummer:12928- Are you looking for a challenging position in a dynamic setting? The Amsterdam School for Cultural Analysis (ASCA) currently has a...


  • Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    PhD Position Political Communication: Affective Polarization Among Social Groups in the NetherlandsFaculteit/Dienst:Faculteit der Maatschappij- & GedragswetenschappenOpleidingsniveau:MasterFunctie type:PromotieplaatsSluitingsdatum:20 May 2024Vacaturenummer:12880 Are you interested in political communication and quantitative empirical research? We are seeking...


  • Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    Open PhD Position: Multimodal Experimentations in More-Than-Human AnthropologyFaculteit/Dienst:Faculteit der Maatschappij- & GedragswetenschappenOpleidingsniveau:MasterFunctie type:PromotieplaatsSluitingsdatum:15 May 2024Vacaturenummer:12883 Are you curious about the relations between humans, animals and their environments? Are you interested in exploring...


  • Amsterdam, Noord-Holland, Nederland AMOLF Voltijd

    Phd - student: Nonlinear metaphotonics for UV semiconductor metrologyWork ActivitiesHow do you design optical metasurfaces that efficiently radiate UV light by nonlinear frequency conversion? How do the geometry of meta-atoms and their arrangement in the metasurface translate into beam structuring, i.e., control over the amplitude, phase and polarization...


  • Amsterdam, Noord-Holland, Nederland AMOLF Voltijd

    PhD-student: Nanophotonics and quantum physics with electrons and lightWork ActivitiesDid you know high-energy electrons can serve as efficient sources of optical excitation of matter? Our group has developed cathodoluminescence microscopy, in which we use 1-30 keV electrons in a scanning electron microscope (SEM) to excite nanomaterials. The oscillating...


  • Amsterdam, Noord-Holland, Nederland VU Amsterdam Voltijd

    Your functionVUSec conducts cutting-edge research in the field of systems security, focusing on various aspects such as attacks, defenses, reverse engineering, and formal verification. The team explores crucial domains including software security, hardware security, and network security, delving into intricate details like operating systems, compilers, and...


  • Amsterdam, Noord-Holland, Nederland Universiteit van Amsterdam Voltijd

    PhD Position in Improving Machine Learning Methods for Contingent Claim Pricing and HedgingFaculteit/Dienst:Faculteit der Natuurw, Wiskunde & InformaticaOpleidingsniveau:MasterFunctie type:PromotieplaatsSluitingsdatum:7 June 2024Vacaturenummer:12897- The Stochastics group at the Korteweg de Vries Institute at the University of Amsterdam and the Actuarial...


  • Amsterdam, Noord-Holland, Nederland VU Amsterdam Voltijd

    Your functionProject descriptionAntibiotic resistance is a major and ever-increasing health threat, projecting to result in 10 million deaths annually by . An often-overlooked cause for this resistance is the fact that many antibacterial agents are unable to effectively target intracellular bacteria. Hidden inside their host cells, these intracellular...